5 years of experience in developing clinical prediction models
using AI/ML Python stack. 9 years of experience in biomedical data
modelling and visualization using semantic web and computer
graphics.
PhD 2013 – 2017, PostDoc 2017 – 2022, h-index 10, 260 citations
(source: Google Scholar, as of Feb 2023)
- Publication track record
-
16 original research journal articles, 6 as first-author
-
12 conference/workshop original research peer-reviewed papers, 7 as
first-author
-
1 book chapter
- Funding and fellowships
-
10,000 Euro, Research grant “Reducing costs of segmentation labeling in
cardiac MRI using explainable AI” from Austrian Cardiological Society
(Österreichishe Kardiologische Gesselschaft)
-
5,000 Euro, funding from internal cooperation agreement with the
Cardiology department at MUW
-
Marie-Curie EU FP7 Initial Training Network “MultiScaleHuman” (Agreement
n. 289897) Early Stage Researcher fellowship (2013 – 2015)
- Research avenues
-
RA1
: Clinical prediction models (2017–present),
published: 9 journals (2 as first), 1 in review, funding: 15,000 Euro
-
RA2
: Neuro-symbolic embeddings (2017–present),
published: 5 journals (3 as first)
-
RA3
: Virtual Physiological Human (PhD, 2013–2017),
published: 2 journals (1 as first), Marie-Curie fellowship
- Computational skills
-
Deep learning and data science (Python stack):
pytorch
, tensorflow
, keras
,
numpy/scipy
, sklearn
, pandas
-
High-performance computing: Linux/Unix CLI toolchains, SLURM
scheduler,
dask
(Python, distributed ML/DL)
-
Web development:
Flask
(Python, backend),
ReactJS
(JavaScript, frontend)
- Languages
-
Native: Russian and Kyrgyz
-
Fluent: English (C2), French (C2), Italian (C1)
-
Basic University level: German (B1), Turkish (A2)
Education
- CNR-IMATI1 : Institute
of Applied Mathematics and Information Technologies, Italian National
Council of Research
- INRIA2 : French
Institute for Research in Computer Science and Automation
- 2013 – 2017
-
PhD in Computer Science, CNR-IMATI1/University of Genoa, Genoa,
Italy
-
Fellowship: EU FP7 Marie-Curie ITN (2013–2015), Agreement n. 289897
-
PhD Thesis: “Biomedical knowledge spaces: handling complexity,
uncertainty and incompleteness via graph analysis”. Supervisors:
Michela Spagnuolo (CNR-IMATI), Giovanna Guerrini (University of Genoa)
- 2008 – 2012
-
BSc and MSc in Computer Science, Joseph Fourier
University, Grenoble, France
-
Master speciality “Artificial Intelligence and the Web”
-
Master thesis: “Essence of JSON”. Research internship at
INRIA
2,
Grenoble, France.
-
Bachelor speciality “Informatics and Applied Mathematics”
Experience
- CeMSIIS-AID 1: Center
for Medical Statistics, Informatics and Intelligent Systems (CeMSIIS),
Institute of Artificial Intelligence and Decision Support
- CNR-IMATI 2: Institute
of Applied Mathematics and Information Technologies, Italian National
Council of Research
- INRIA 3: French
Institute for Research in Computer Science and Automation
- MOAÏS 4: prograMming and
scheduling design on distributed resOurces for Applications based on
Interactive Simulation
- Aug 2022 – present
-
Senior Data Scientist,
Takeda Pharmaceutical
, Vienna, Austria
- Jun 2017 – Jun 2022
-
Postdoc,
CeMSIIS-AID
1, Medical University of Vienna,
Vienna, Austria
- Oct 2015 – May 2017
-
Research Assistant,
CNR-IMATI
2, Genoa, Italy.
- Jan 2013 – Sep 2015
-
Early Stage Researcher, Marie-Curie EU FP7 ITN
“MultiScaleHuman” (Agreement n. 289897),
CNR-IMATI
2, Genoa, Italy.
- Sep 2012 – Dec 2012
-
Software Developer;
Ausy
(IT consulting
company) for client France Telecom
, Paris, France
- Feb 2012 – Jul 2012
-
Research intern, WAM (Web Adaptation Media) team at
INRIA
3,
Grenoble, France
- Feb 2011 – Jul 2011
-
Research intern, MOAÏS4 team at
INRIA
,
Grenoble, France
- Summer 2010
-
Intern at
Thermodata
(Chemoinformatics
company), Grenoble, France.
Peer-reviewed publications
publications since 2014 thematically organized according to the
research avenues (see also 1 page)
Journals
Journal Impact Factor (IF) data pulled from the Journal Citation
Reports 2020 from Clarivate Analytics
RA1. Clinical prediction models (2017–2022)
- Machine Learning and Deep Learning models for prediction of patient
clinical outcomes
- 9 journals (2 as first) published
[J.1]
IF 4.9
-
Bologheanu, Razvan,
Lorenz Kapral, Daniel Laxar, Mathias Maleczek, Christoph Dibiasi,
Sebastian Zeiner, Asan Agibetov, Ari Ercole, Patrick Thoral, Paul
Elbers, Clemens Heitzinger, and Oliver Kimberger. 2023.
“Development of a reinforcement learning algorithm to optimize
corticosteroid therapy in critically ill patients with sepsis.”
Journal of Clinical Medicine 12 (4) (February): 1513. doi:10.3390/jcm12041513. https://doi.org/10.3390/jcm12041513.
[J.2]
IF 4.9
-
Agibetov, Asan,
Andreas Kammerlander, Franz Duca, Christian Nitsche, Matthias
Koschutnik, Carolina Doná, Theresa-Marie Dachs, René Rettl, Lore
Schrutka, Christina Binder, Johannes Kastner, Hermine Agis, Renate Kain,
Michaela Auer-Grumbach, Matthias Samwald, Christian Hengstenberg, Georg
Dorffner, Julia Mascherbauer, and Diana Bonderman. 2021.
“Convolutional neural networks for fully automated diagnosis of
cardiac amyloidosis by cardiac magnetic resonance imaging.”
Journal of Personalized Medicine 11 (12). doi:10.3390/jpm11121268. https://www.mdpi.com/2075-4426/11/12/1268.
[J.3]
IF 4.6
-
Wallisch, Christine,
Asan Agibetov, Daniela Dunkler, Maria Haller, Matthias Samwald, Georg
Dorffner, and Georg Heinze. 2021. “Transparency of cardiovascular
risk prediction: A question of (modeling) culture?” BMC
Medical Research Methodology 21 (1) (December). doi:10.1186/s12874-021-01487-4. https://doi.org/10.1186%2Fs12874-021-01487-4.
[J.4]
IF 5.9
-
Schrutka, Lore, Philip
Anner, Asan Agibetov, Benjamin Seirer, Fabian Dusik, René Rettl, Franz
Duca, Daniel Dalos, Theresa-Marie Dachs, Christina Binder, Roza
Badr-Eslam, Johannes Kastner, Dietrich Beitzke, Christian Loewe,
Christian Hengstenberg, Günther Laufer, Guenter Stix, Georg Dorffner,
and Diana Bonderman. 2021. “Machine learning-derived
electrocardiographic algorithm for the detection of cardiac
amyloidosis.” Heart. doi:10.1136/heartjnl-2021-319846. https://heart.bmj.com/content/early/2021/10/28/heartjnl-2021-319846.
[J.5]
IF 3.6
-
Motyka, Stanislav, Lukas
Hingerl, Bernhard Strasser, Gilbert Hangel, Eva Heckova, Asan Agibetov,
Georg Dorffner, Stephan Gruber, Siegfried Trattning, and Wolfgang
Bogner. 2021. “K-space-based coil combination via geometric deep
learning for reconstruction of non-cartesian MRSI data.”
Magnetic Resonance in Medicine 86 (5): 2353–2367. doi:https://doi.org/10.1002/mrm.28876. https://onlinelibrary.wiley.com/doi/abs/10.1002/mrm.28876.
[J.6]
IF 3.3
-
Agibetov, Asan,
Benjamin Seirer, Theresa-Marie Dachs, Matthias Koschutnik, Daniel Dalos,
René Rettl, Franz Duca, Lore Schrutka, Hermine Agis, Renate Kain,
Michaela Auer-Grumbach, Matthias Samwald, Christian Hengstenberg, Georg
Dorffner, Julia Mascherbauer, and Diana Bonderman. 2020. “Machine
learning enables prediction of cardiac amyloidosis by routine laboratory
parameters: A proof-of-concept study.” Journal of Clinical
Medicine 9 (5): 1334.
-
available online https://doi.org/10.3390/jcm9051334
[J.7]
IF N/A
-
Beck-Tölly,
Andrea, Michael Eder, Dietrich Beitzke, Farsad Eskandary, Asan Agibetov,
Katharina Lampichler, Martina Hamböck, Heinz Regele, Johannes Kläger,
Maja Nackenhorst, and Georg A. Böhmig. 2020. “Magnetic resonance
imaging for evaluation of interstitial fibrosis in kidney
allografts.” Transplantation Direct 6 (8) (July): e577.
doi:10.1097/TXD.0000000000001009.
[J.8]
IF 3.3
-
Schrutka,
Lore, Benjamin Seirer, Franz Duca, Christina Binder, Daniel Dalos,
Andreas Kammerlander, Stefan Aschauer, Lorenz Koller, Alberto Benazzo,
Asan Agibetov, Marianne Gwechenberger, Christian Hengstenberg, Julia
Mascherbauer, and Diana Bonderman. 2019. “Patients with heart
failure and preserved ejection fraction are at risk of gastrointestinal
bleeding.” Journal of Clinical Medicine 8 (8):
1240.
[J.9]
IF 7.7
-
Binder,
Christina, Marko Poglitsch, Asan Agibetov, Franz Duca, Caroline
Zotter-Tufaro, Christian Nitsche, Stefan Aschauer, Andreas A
Kammerlander, Beguem Oeztuerk, Christian Hengstenberg, Julia
Mascherbauer, and Diana Bonderman. 2019. “Angs (angiotensins) of
the alternative renin-angiotensin system predict outcome in patients
with heart failure and preserved ejection fraction.”
Hypertension: 119.
- IF 7.0
-
Dibiasi, Christoph, and
Asan Agibetov et al. 2023. “Predicting intraoperative hypothermia
burden during non-cardiac surgery: A retrospective study comparing
regression to six machine learning algorithms.” Computer
Methods and Programs in Biomedicine: In review.
-
Equal contributions with C. Dibiasi
RA2. Neuro-symbolic embeddings (2017–present)
- Merging symbolic and deep learning (neural) technologies to learn
latent graph and text representations (embeddings)
- 5 journals (3 as first) published
- 5 conference/workshop (3 as first) published
[CW.1-5]
(see below)
[J.10]
IF 8.5
-
Asan
Agibetov. 2022. “Neural graph embeddings as explicit low-rank
matrix factorization for link prediction.” Pattern
Recognition: 108977. doi:https://doi.org/10.1016/j.patcog.2022.108977.
https://www.sciencedirect.com/science/article/pii/S0031320322004575.
-
available online https://doi.org/10.1016/j.patcog.2022.108977
[J.11]
IF 2.2
-
Agibetov,
Asan, and Matthias Samwald. 2020. “Benchmarking neural embeddings
for link prediction in knowledge graphs under semantic and structural
changes.” Journal of Web Semantics 64: 100590.
-
available on arXiv (identical content to the published version)
https://arxiv.org/abs/2005.07654
[J.12]
IF 5.6
-
Breit, Anna,
Simon Ott, Asan Agibetov, and Matthias Samwald. 2020. “OpenBioLink: a benchmarking framework for large-scale
biomedical link prediction.” Bioinformatics 36
(13): 4097–4098.
[J.13]
IF 3.2
-
Blagec, Kathrin,
Hong Xu, Asan Agibetov, and Matthias Samwald. 2019. “Neural
sentence embedding models for semantic similarity estimation in the
biomedical domain.” BMC Bioinformatics 20
(1): 178:1–178:10.
[J.14]
IF 3.2
-
Agibetov, Asan,
Kathrin Blagec, Hong Xu, and Matthias Samwald. 2018. “Fast and
scalable neural embedding models for biomedical sentence
classification.” BMC Bioinformatics 19 (1):
541:1–541:9.
-
available online https://doi.org/10.1186/s12859-018-2496-4
RA3. Virtual Physiological Human (PhD,
2013–2017)
- Multi-modal data integration, visualization and processing for
advanced understanding of musculoskeletal diseases, e.g.,
osteoarthritis
- 2 journals (1 as first) published
- 7 conference/workshop (5 as first) published
[CW.6-12]
(see below)
[J.15]
IF 2.6
-
Agibetov,
Asan, Ernesto Jiménez-Ruiz, Marta Ondrésik, Alessandro Solimando, Imon
Banerjee, Giovanna Guerrini, Chiara E. Catalano, Joaquim M. Oliveira,
Giuseppe Patanè, Rui L. Reis, and Michela Spagnuolo. 2018.
“Supporting shared hypothesis testing in the biomedical
domain.” Journal of Biomedical Semantics 9 (1):
9.
-
available online https://doi.org/10.1186/s13326-018-0177-x
[J.16]
IF 1.4
-
Banerjee, Imon, Asan
Agibetov, Chiara Eva Catalano, Giuseppe Patanè, and Michela Spagnuolo.
2016. “Semantics-driven annotation of patient-specific 3D data: A
step to assist diagnosis and treatment of rheumatoid arthritis.”
The Visual Computer 32 (10): 1337–1349.
Conferences/Workshops
- All listed papers were peer-reviewed by at least 2 reviewers and
presented at international venues
- Ordered chronologically, latest first
[CW.1]
-
Jimenez-Ruiz,
Ernesto, Asan Agibetov, Jiaoyan Chen, Matthias Samwald, and Valerie
Cross. 2020. “Dividing the ontology alignment task with semantic
embeddings and logic-based modules.” In Proc. European conf.
On AI (ECAI 2020).
[CW.2]
-
Agibetov,
Asan, Georg Dorffner, and Matthias Samwald. 2019. “Using
hyperbolic large-margin classifiers for biological link
prediction.” In Proc. Semantic deep learning (SemDeep-5)
workshop @ international joint conference on AI (IJCAI)
2019, 26–30.
-
available online https://www.aclweb.org/anthology/W19-5805
[CW.3]
-
Agibetov,
Asan, and Matthias Samwald. 2018. “Global and local evaluation of
link prediction tasks with neural embeddings.” In Proc.
Semantic deep learning (SemDeep-4) workshop @ international semantic web
conference (ISWC 2018), 89–102.
[CW.4]
-
Jiménez-Ruiz,
Ernesto, Asan Agibetov, Matthias Samwald, and Valerie Cross. 2018.
“We divide, you conquer: From large-scale ontology alignment to
manageable subtasks with a lexical index and neural embeddings.”
In Proc. Ontology matching workshop @ international semantic web
conferencea (ISWC 2018) 2018, 13–24.
[CW.5]
-
Agibetov, Asan,
and Matthias Samwald. 2018. “Fast and scalable learning of
neuro-symbolic representations of biomedical knowledge.” In
Proc. Deep learning for knowledge graphs and semantic technologies
workshop (DL4KGS) @ extended semantic web conerence
(ESWC 2018), 62–71.
[CW.6]
-
Agibetov,
Asan, Karelia Tecante, Chiara Eva Catalno, Giuseppe Patanè, Christof
Hurschler, and Michela Spagnuolo. 2016. “GaitViewer:
Semantic Gait Data
Analysis and Visualization
Tool.” In Proc. Of Knowledge
Discovery on the Web. Vol. 1748.
[CW.7]
-
Agibetov,
Asan, Chiara Eva-Catalano, Giuseppe Patané, and Michela Spagnuolo. 2016.
“A Web-based Application
for Difference Assessment of
Medical Image
Segmentations.” In Proc. Spring conference in
computer graphics, ed by. The Eurographics Association.
[CW.8]
-
Agibetov,
Asan, Ernesto Jiménez-Ruiz, Alessandro Solimando, Giovanna Guerrini,
Giuseppe Patanè, and Michela Spagnuolo. 2015. “Towards
Shared Hypothesis Testing in the
Biomedical Domain.” In Proc. Of
international conference semantic web applications and tools for life
sciences SWAT4LS 2015, 1546:33–37.
[CW.9]
-
Agibetov, Asan, Giuseppe
Patanè, and Michela Spagnuolo. 2015. “Grontocrawler:
Graph-Based Ontology
Exploration.” In Proc. Eurographics
Italian Chapter Conference -
smart Tools and Apps for
Graphics, 67–76.
[CW.10]
-
Vaquero,
Ricardo Manuel Millán, Asan Agibetov, Jan Rzepecki, Marta Ondresik,
Alexander Vais, Joaquim Miguel Oliveira, Giuseppe Patanè, Karl-Ingo
Friese, Rui Luis Reis, Michela Spagnuolo, and Franz-Erich Wolter. 2015.
“A Semantically Adaptable
Integrated Visualization and
Natural Exploration of
Multi-scale Biomedical
Data.” In International
Conference on Information
Visualisation, 543–552.
[CW.11]
-
Banerjee,
Imon, Asan Agibetov, Chiara Eva-Catalano, Giuseppe Patané, and Michela
Spagnuolo. 2015. “Semantic annotation of patient-specific 3D
anatomical models.” In Proc. International
Conference on Cyberworlds, ed by. IEEE,
22–29.
[CW.12]
-
Agibetov,
Asan, Ricardo Manuel Millan Vaquero, Karl-Ingo Friese, Giuseppe Patane,
Michela Spagnuolo, and Franz-Erich Wolter. 2014. “Integrated
Visualization and Analysis of a
Multi-scale Biomedical Knowledge
Space.” In Proc. EuroVis
Workshop on Visual
Analytics. The Eurographics Association.
Clinical conference
abstracts/posters
Published posters at top cardiological conferences. Not counted
as publications
[P.1]
-
Stria, Alessa, and
Asan Agibetov. 2021. “Towards reducing segmentation labelling
costs for CMR imaging using explainable AI.” In Wiener
klinische wochenschrift, 133:S66–S68. Presented at the
Annual meeting of Austrian Society of Cardiology (virtual), 2021
[P.2]
-
Agibetov,
Asan, Benjamin Seirer, Theresa-Marie Dachs, Matthias Koschutnik, Daniel
Dalos, René Rettl, Franz Duca, Lore Schrutka, Hermine Agis, Renate Kain,
Michaela Auer-Grumbach, Matthias Samwald, Christian Hengstenberg, Georg
Dorffner, Julia Mascherbauer, and Diana Bonderman. 2019.
“Extremely boosted prediction of cardiac amyloidosis by routine
laboratory paramaters.” In European heart journal,
40:1677–1677. Presented at the Congress of European Society of
Cardiology in Paris, 2018
[P.3]
-
Agibetov, Asan,
Benjamin Seirer, Theresa-Marie Dachs, Matthias Koschutnik, Daniel Dalos,
René Rettl, Franz Duca, Lore Schrutka, Hermine Agis, Renate Kain,
Michaela Auer-Grumbach, Matthias Samwald, Christian Hengstenberg, Georg
Dorffner, Julia Mascherbauer, and Diana Bonderman. 2019. “Optimal
variable selection for simple prediction model of cardiac amyloidosis by
routine laboratory parameters.” In Wiener klinische
wochenschrift, 131:367–368. Presented at the Annual meeting
of Austrian Society of Cardiology in Salzburg, 2018
Invited book chapters
[B.1]
-
Agibetov,
Asan. 2013. Essence of JSON. LAP LAMBERT Academic
Publishing, OmniScriptum GmbH & Co. KG.
Third-party funding and
fellowships
- 2021 – 2022
-
Research grant “Reducing costs of segmentation labeling in cardiac MRI
using explainable AI” from Austrian Cardiological Society (10,000 Euro,
Österreichishe Kardiologische Gesselschaft)
- 2020 – 2021
-
Funding from internal cooperation agreement at Medical University of
Vienna (~5,000 Euro)
- 2013 – 2015
-
Marie-Curie EU FP7 Initial Training Network “MultiScaleHuman” (Agreement
n. 289897) Early Stage Researcher fellowship
Invited lectures and talks
- 9–13 April 2018
-
PhD level: Lecture series on “Doing research in
Europe”, 40 hours of lectures and final examination (100%). Kyrgyz
National University (KNU) of Zh. Balassagyn, Bishkek, Kyrgyz Republic
Invited talks
Excluding accepted conference/workshop papers and posters.
Ordered chronologically
- Sep 2021
-
Keynote “Virtual screening of large chemical databases with AI”. 4th
Annual STRATAGEM (EU Cost Action) conference on “New diagnostic and
therapeutic tools against multidrug resistant tumours”
- Nov 2019
-
“Case study 1: Diagnosing Cardiac Amyloidosis Based on MRI”. Jointly
with Prof. Bonderman from Cardiology department, Medical University of
Vienna. Symposium: Artificial Intelligence in Clinical and
Preclinical Settings. Can AI revolutionize medical practice?
Medical Univeristy of Vienna, Austria
- Oct 2019
-
“Wet Lab partners with AI to inspect tumor pathways. Hallmarks of cancer
in the hyperbolic space”. Cancer Research Institute, Medical University
of Vienna, Austria
- Jun 2018
-
“Diagnosing Cardiac Amyloidosis from MRI using a Deep Learning
Approach”. Symposium: Data Science for Personalized Medicine,
Medical University of Vienna, Austria
- Mar 2017
-
“Biomedical knowledge spaces: handling complexity, uncertainty and
incompleteness via graph analysis”. Postdoc interview at Section for AI
and Decision Support, Medical University of Vienna, Austria
- Jan 2017
-
“Biomedical knowledge spaces: handling complexity, uncertainty and
incompleteness via graph analysis”. Postdoc interview at Informatics
department, University of Oslo, Norway
- Jun 2015
-
“Ontology Modularization for Multi-scale Biomedical Data Management and
Visualization”. Symposium: 29th International Congress and Exhibition of
Computer Assisted Radiology and Surgery (CARS), Barcelona, Spain
- Oct 2014
-
“Collaborative knowledge formalization and visualization: detecting
similarities and changes”. Symposium: Festival della Scienza, Genoa,
Italy
Cooperation partners
Current
This list includes those partners with whom I have collaborated
on manuscripts, such that I and partner assumed the key authorship
roles, i.e., I as first-author, and the partner as a corresponding
author, and with whom I have a long-term collaboration project that
includes joint grant application submission and manuscript preparation.
These partners could potentially join a common grant
application
- Diana Bonderman
-
(Assoc.-Prof.) Head of Cardiology Department, Kaiser
Franz-Joseph Spital, Vienna, Austria/Cardiology department, Medical
University of Vienna, Vienna, Austria.
-
Current cooperation: manuscripts published, manuscript in review,
grant application in review
- Oliver Kimberger
-
(Assoc.-Prof.) Anaesthesiology department, Medical
University of Vienna, Vienna, Austria/(Co-I) Ludwig
Boltzmann Institute Digital Health and Patient Safety.
-
Cooperation: manuscript in preparation
- Ernesto Jiménez-Ruìz
-
(Lecturer) City, University of London, London,
UK/(Researcher) Center for Scalable Data Access
(SIRIUS), Oslo, Norway
-
Cooperation: manuscripts published
- Dagmar Gromann
-
(Assistant-Prof.) Center for Translational Studies,
University of Vienna, Austria
- Andrea Stocco
-
(Postdoc) Software Institute, Università della Svizzera
italiana (USI), Lugano, Switzerland
Past
This list excludes my previous supervisors
- Franz-Erich Wolter
-
(Full Professor) Head of Man-Machine Communication
Institute of Computer Graphics, University of Hanover, Germany
-
Cooperation: manuscripts published, Marie-Curie ITN consortium
members
- Joaquim M. Oliveira
-
(Vice-president) Biomaterials, Biodegradables,
Biomimetics (3B’s) Research Group, University of Minho, Braga, Portugal
-
Cooperation: manuscripts published, Marie-Curie ITN consortium
members
Teaching and supervision
- WS/SS 2017 - Winter/Summer semester of academic year
2017/2018
- Teaching material contribution in %, e.g., SS 2017 (25%) -
prepared 25% of lectures/exercises/exam questions in summer semester
2017/2018
- WS 2017, WS 2018, WS 2020, SS2022
-
PhD level: “Basic Lecture Complex Systems &
Artificial Intelligence”, 1 ECTS, WS 2017, WS2018 (6%), WS 2020 (12%),
PhD program in Medical Informatics, Medical University of Vienna
- WS 2017-2022
-
Master level: “Machine Learning in der Medizin”. LV
840.042 (VU), 2 ECTS, WS 2017-2018 (25%), WS 2019-2022 (50%), Medical
Informatics Master, Medical University of Vienna
- SS 2019
-
Master level: “Aktuelle Themen der Medizinischen
Informatik - Deep Learning Notebooks”. LV 840.001 (VO), 2 ECTS, SS 2019
(100%), Medical Informatics Master, Medical University of Vienna
In the preparation of my lectures I use the following
textbooks
- Goodfellow, Ian, Yoshua
Bengio, and Aaron Courville. 2016. Deep learning. MIT
Press.
- Strang, Gilbert. 2019.
Linear algebra and learning from data. Cambridge University
Press.
- Hastie, Trevor, Robert
Tibshirani, and Jerome Friedman. 2009. The elements of statistical
learning 2nd edition. Springer series in statistics. Springer New
York Inc.
- Nielsen,
Michael A. 2018. “Neural networks and deep learning.”
Determination Press.
Supervision
- SS 2019 – present
-
Master thesis supervision: “Gradient class activation
maps as efficient priors to convolutional neural networks. Applications
in cardiac imaging” by Alessa Katherina Stria, Medical University of
Vienna
- Aug 7, 2020
-
Invited external committee: for Master thesis
“Understanding the Role of Background Knowledge in Predictions” defence
by Nils Petter at Informatics Department, University of Oslo
- SS 2018
-
Bachelor thesis supervision: “Visual comparison of
activations of pre-trained convolutional neural networks on medical
images” by Daiana Crisan, University of Vienna
Teaching assistant
- WS 2020
-
Medecine Doctor level: “SSM1 Medizinische
Informationssuche”. Pflichtpraktikum, 0.5 ECTS, Medical University of
Vienna
- 17-19 Sep 2019
-
PhD level: Training school “Computational methods in
MDR research”. STRATAGEM COST Action CA17104 “New diagnostic and
therapeutic tools against multidrug resistant tumours”, Vienna,
Austria
Esteem factors
Journal Impact Factor (IF) data pulled from the Journal Citation
Reports 2020 from Clarivate Analytics
- Editorial review board
-
International Journal of Privacy and Health Information Management
(IJPHIM) 2017–present (IF N/A)
Reviewing 2 to 3 submitted papers, taking active part in
acceptance/rejection decisions, delegating reviews to external
reviewers
- Program committee
-
International Workshop on Neural-Symbolic Learning and Reasoning (NeSy)
2021
-
Extended Semantic Web Conference (ESWC) Posters and Demos 2017, 2018,
2019
-
Brain Informatics (BI) 2017
Reviewing activities
- Reviewer (journal)
-
Journal of American College of Cardiology (JACC) 2019, 2020 (IF 20.5)
-
JACC-Heart Failure 2020 (IF 8.7)
-
Computers in Biology and Medicine, 2020 (IF 3.4)
-
Joural of Web Semantics 2019-2022 (IF 2.2)
- Reviewer (conference/workshop)
-
International Semantic Web Conference (ISWC) Posters and Demos 2016
-
Brain Informatics (BI) 2016
-
Global Conference on Artificial Intelligence (GCAI) 2017
-
International Multidisciplinary Conference on e-Technologies (MCETECH)
2017
Memberships and volunteering
- Member
-
European Heart Association, 2018 – 2019
-
Austrian Society of Cardiology (Österreichische Kardiologische
Gesellschaft), 2018 – 2019
-
Marie Curie Alumni Association Austrian Chapter, 2018 – present
- Founding member
-
Marie Curie Alumni Association in Central Asia Interest Group.
Role: organization of events, 2019 – present
-
Unofficial journal club of “Data Science in clinical practice” at
Medical University of Vienna. Role: organization of events,
2018 – present
- Student volunteer
-
Eurographics 2016, 9–13 May, 2016, Lisbon, Portugal
-
Symposium on Geometry Processing (SGP) 2013, 3–6 July, 2013, Genoa,
Italy
Attended Summer Schools
1 ECTS = ~10 hours. Ordered chronologically, latest
first
- Jul 2017 (3 ECTS)
-
“International Summer School on Deep Learning (DeepLearn)”,
1300 participants, 3 keynotes, 30 six-hour courses from top AI
researchers, 17 – 21 July, 2017, Bilbao, Spain
- Jul 2014 (6 ECTS)
-
“Summer School on Science management for scientists and engineers
(SoSMSE)”, Erasmus training program on Innovation and valorization,
Spin off, European Patent law, 6 ECTS (60 hours), 7 – 18 July, 2014,
Genoa, Italy
- Jul 2014 (2 ECTS)
-
“Regularization Methods for Machine Learning (RegML)”, summer
school on reproducing kernel Hilbert spaces, 20 hours of courses,
University of Genoa, 30 Jun – 4 July, Genoa, Italy
- Jan 2014 (2 ECTS)
-
“Foundations and Challenges of Change in Ontologies and Databases
(FCCOD)”, research school in traditional AI for PhD students and
Postdocs, 29 – 31 Januray, 2014, Bolzano, Italy
- Jul 2013 (1 ECTS)
-
“Symposium on Geometry Processing (SGP). Graduate School”, 2
day of courses on geometry processing algorithms, 1 – 2 July, 2013,
Genoa, Italy
- Mar 2013 (3 ECTS)
-
“Bertinoro international Spring School (BISS)”, 39 hours of
lectures, graduate school for PhD students in Computer Science, 3 – 9
March, 2013, Bertinoro (Forlì-Cesena), Italy